Sorry don't know the answer to ALL your questions but: If you are a Sole Trader, you can assign your tax credits to your PAYE employment, the Sole Trader, or a mixture of the two. In the past we've found it better to assign them to the PAYE account. When it comes to filing a return, it is combined (PAYE/Sole Trader) you are asked to supply details of profit/loss and ROS calculates the amount of tax owed. There is a section for taxes already paid (PAYE) which is deducted. Hope this makes some sense!