Blockages in drains of new estates is quite common. They are often laid in a hurry (leaving gravel fall in) and suffer with tilers and other contractors leaving grout and concrete fall in. The contractor will be obliged to provide the council with a report and tape of a camera survey (carried out by Drain co.) before the council "take over" the estate. Most drain cleaning is only carried out JUST before handover when an entire clean of the lines is done.
Are you're neighbours experiencing any problems? Have you any other problems aside from the smell? ie water in sink, shower, bath slow to discharge or water level in toilet rising before eventually subsiding? You could very well have a localised blockage on your property.
If your house is in a terraced row of houses you may have a problem in the common drain shared by all the houses. If you & your neighbours are experiencing problems, then ask your builder to get the drain co. to jetblast the line.
The flooding during heavy rain could indicate a problem with the storm drains. They too could be blocked or it could be due to poor soakage in the area. Our estate is built on an old bog and we have water pouring down the estate road and the force of the water exiting the storm drain is fierce.