Bertson, our bungalow has two bathrooms and only one s/pipe which is on the main bathroom. I dont know if it's supposed to have two. In our case the bathroom without the pipe is on the gable and visible from the road so I guess it would look unsightly, while the pipe is at the back of the house. Maybe someone else might be able to tell us?
A soil vent pipe - not always necessary, depending on where the toilets are on the drainage system.
Unless it was a complete cowboy who installed the system, you'll be ok.